Basic Information
VIS ID
TVIS30006613
Fusion event
HIV-LOC105370838 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
60322675/60030476 (Hg38)
End
60322675/60030476 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA15A
Target gene
LOC105370838
Nearest miRNA
hsa-mir-10393/Upstream/859214; hsa-mir-11181/Downstream/2274182;
Nearest TSS
ENST00000557528/Upstream/26242; ENST00000558693/Downstream/5654;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/24155, chr15-CpG: 63/Downstream/367074
Nearby gene
FOXB1(No orient, 24533)
Upstream sequence
TTTCTTGGTTttttcttttcttttcttttcttttTTGttttgagatggagttttgctgttgttgcccaggctggagtgcagtgttgcaatcttggctcac
Downstream sequence
cacaacctctgcctccaaggttcaagcgattctcctgccttagccaccatagtagctgggattacaggcatccatcaccactcccggctaatgttgtatt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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