Basic Information
VIS ID
TVIS30006616
Fusion event
HIV-RORA-AS1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
60859262/60567063 (Hg38)
End
60859262/60567063 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA15A
Target gene
RORA-AS1
Nearest miRNA
hsa-mir-10393/Upstream/1395801; hsa-mir-11181/Downstream/1737595;
Nearest TSS
ENST00000557528/Upstream/37090; ENST00000620208/Downstream/25454;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/87704, chr15-CpG: 200/Downstream/24036
Upstream sequence
TTAAGCCTTCAGAACAGAAAGGAGTCTGTTTAGATTACGTGTGAGAGCTCATCTGTCCAATGTTCAACCACACAATCTCAATAATGATAAAGATACTAAC
Downstream sequence
AAAGATGAACTAGCCAAAACCATTAATCTGCTTCCATAACGAGCTAGCCTATGAGtttttaaaatatgtttctagccattaataaccagggaatttcaca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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