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TVIS30006624
Basic Information
VIS ID
TVIS30006624
Fusion event
HIV-RAB8B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
63515276/63223077 (Hg38)
End
63515276/63223077 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA15A
Target gene
RAB8B
miRNAs that regulate target gene
hsa-mir-361-5p
;
hsa-mir-128-3p
;
hsa-mir-215-5p
;
hsa-mir-192-5p
;
hsa-mir-101-3p
;
hsa-mir-93-5p
;
hsa-mir-9-5p
;
hsa-mir-19a-3p
;
hsa-mir-19b-3p
;
hsa-mir-141-3p
;
hsa-mir-200a-3p
;
hsa-mir-518a-5p
;
hsa-mir-527
;
hsa-mir-559
;
hsa-mir-548b-5p
;
hsa-mir-548a-5p
;
hsa-mir-548c-5p
;
hsa-mir-548d-5p
;
hsa-mir-548j-5p
;
hsa-mir-548h-5p
;
hsa-mir-548i
;
hsa-mir-548w
;
hsa-mir-548y
;
hsa-mir-548o-5p
;
hsa-mir-548ab
;
hsa-mir-548ad-5p
;
hsa-mir-548ae-5p
;
hsa-mir-548ak
;
hsa-mir-548am-5p
;
hsa-mir-3973
;
hsa-mir-548ap-5p
;
hsa-mir-548aq-5p
;
hsa-mir-548ar-5p
;
hsa-mir-548as-5p
;
hsa-mir-548au-5p
;
hsa-mir-548ay-5p
;
hsa-mir-548bb-5p
;
hsa-mir-32-5p
;
hsa-mir-92a-3p
;
hsa-mir-92b-3p
;
hsa-mir-548aw
;
hsa-mir-369-3p
;
hsa-mir-374a-5p
;
hsa-mir-374b-5p
;
hsa-mir-1252-3p
;
hsa-mir-520f-3p
;
hsa-mir-1909-5p
;
hsa-mir-5680
;
hsa-mir-3678-3p
;
hsa-mir-1273h-3p
;
hsa-mir-4720-3p
;
hsa-mir-4804-3p
;
hsa-mir-298
;
hsa-mir-302c-3p
;
hsa-mir-6516-3p
;
hsa-mir-1468-3p
;
hsa-mir-548x-5p
;
hsa-mir-548g-5p
;
hsa-mir-548f-5p
;
hsa-mir-548aj-5p
;
hsa-mir-548c-3p
Nearest miRNA
hsa-mir-10393/Upstream/399036; hsa-mir-11181/Downstream/647853;
Nearest TSS
ENST00000557528/Upstream/33471;
ENST00000559744/Downstream/52941;
Nearest CpG islands
None/Target,
chr15-CpG: 55/Upstream/33122
,
chr15-CpG: 23/Downstream/54020
Upstream sequence
agtagtgtacagtaatgtcctaggccttcacattcactcatcactctctcattgattccttcagagcaacttccagtcctgtaagcgcctttcatggtaa
Downstream sequence
gtaccctatataggtataccatttttattttacttattttttgttattttttgagacggaatcttgctctgtcacccaggctggtatgcagtggcatgat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Central Memory CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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