Basic Information
VIS ID
TVIS30006636
Fusion event
HIV-LOC105370866 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q22.31
Reference genome
GRCh37/hg19
Start
66096868/65804530 (Hg38)
End
66096868/65804530 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA15A
Target gene
LOC105370866
Nearest miRNA
hsa-mir-10393/Upstream/85198; hsa-mir-11181/Downstream/235703;
Nearest TSS
ENST00000557528/Upstream/12083; ENST00000566233/Downstream/64926;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/11943, chr15-CpG: 82/Downstream/64681
Nearby gene
DENND4A(No orient, 12237)
Upstream sequence
tgggcataatagtgtatgcctatagtcccagctacacatgaggctgaagatgggagtattgcttgaacccaggaggttgaggctgcaatgagctatgata
Downstream sequence
gcaccactgcactccagcctgggcaacagaatgagaccctgtctcaaaaataaataaaTATATAAAGAATCCTTTTTTCTCCTAAtctctctctctctct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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