Basic Information
VIS ID
TVIS30006640
Fusion event
HIV-LOC107984788 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q23
Reference genome
GRCh37/hg19
Start
70066249/69773910 (Hg38)
End
70066249/69773910 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107984788
Nearest miRNA
hsa-mir-10393/Upstream/971985; hsa-mir-11181/Downstream/305462;
Nearest TSS
ENST00000557528/Upstream/102162; ENST00000558385/Downstream/48946;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/320503, chr15-CpG: 21/Downstream/259943
Nearby gene
LINC00593(No orient, 61324)
Upstream sequence
ctacaaggctacagtaaccaaaacagcatggtactggtatgaaaacagagatacagaccaatggaacagaacagagccctcagaaataacaccacacatc
Downstream sequence
tacaagcatctgatctttgacaaacctgactaaaacaagaaatggattccctatttaataaatggtgctgggaaaactggctagccatatgtagaaagcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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