Basic Information
VIS ID
TVIS30006646
Fusion event
HIV-chr15 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
74826725/74534384 (Hg38)
End
74826725/74534384 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10393/Upstream/122952; hsa-mir-11181/Downstream/254288;
Nearest TSS
ENST00000557528/Upstream/44782; ENST00000569680/Downstream/6793;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/72746, chr15-CpG: 76/Downstream/6516
Nearby gene
ARID3B(No orient, 6793)
Upstream sequence
tggctcacacctgtaatcccagcactttgggaggctgagacgggcgaatcacgaggtcaggagatcgagaccatcctggctaacacagtgaaatcctgtc
Downstream sequence
tttactaaaaatacaaaaaaaaattagccgggcttggtggcgggtgcctgtagtcccagctactggggaggctgaggcaggagaatggcatgaacccagg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate