Basic Information
VIS ID
TVIS30006654
Fusion event
HIV-UBE2Q2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
76150239/75857898 (Hg38)
End
76150239/75857898 (Hg38)
Orient
-
Location type
Intronic
Target gene
UBE2Q2
miRNAs that regulate target gene
hsa-mir-32-5p ; hsa-mir-92b-3p ; hsa-mir-331-3p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p
Nearest miRNA
hsa-mir-10393/Upstream/95583; hsa-mir-11181/Downstream/3351890;
Nearest TSS
ENST00000557528/Upstream/13751; ENST00000563966/Downstream/2042;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/13714, chr15-CpG: 78/Downstream/45864
Upstream sequence
tgcagatttctaagatatattaaatgaaaaagcaaggcataaaatattgtgtataattggcccctttagtataTAATGTAAAAAAAATCTATATGCTTGT
Downstream sequence
TTATACTTTTTTCTTTCCTGGTGGGTACAGGAAACTGTCAATAGTAGAACACAATTAAGAAAAATTGGCTTCtgtgtcaggctctgtgataattgagtat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate