Basic Information
VIS ID
TVIS30006669
Fusion event
HIV-IL16 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
81540426/81248085 (Hg38)
End
81540426/81248085 (Hg38)
Orient
+
Location type
Intronic
Target gene
IL16
Nearest miRNA
hsa-mir-10393/Upstream/250612; hsa-mir-11181/Downstream/1819250;
Nearest TSS
ENST00000557528/Upstream/22685; ENST00000560230/Downstream/30793;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/113724, chr15-CpG: 66/Downstream/75827
Upstream sequence
tactgctttttgtctgcttgatctatcagtttcttaaggagtcggttaaaaatctcatgctagattttccttttagttatttcagcattatgaggctatg
Downstream sequence
ttataaggtgcgaacatttagaattgttatatattctttatgattgaaagcagttataatttatatcctgagtttatctctattatttttgtttgaatct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate