Basic Information
VIS ID
TVIS30006676
Fusion event
HIV-LOC105370956 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
87871729/87328498 (Hg38)
End
87871729/87328498 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105370956
Nearest miRNA
hsa-mir-10393/Upstream/1502768; hsa-mir-11181/Downstream/617708;
Nearest TSS
ENST00000557528/Upstream/286444; ENST00000560153/Downstream/248431;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/1487614, chr15-CpG: 36/Downstream/926925
Nearby gene
LINC00052(No orient, 248431)
Upstream sequence
gtttaattagatcccatttgtcaattttggctttggttgccattgcttttggtgttttagacatgaagtccttacccatgcctatgtcctgaatggtaat
Downstream sequence
gcctaggttttcttctagggtttttatggttttaggtctaacatttaagtctttaatccatcttgaattaatttttgtataaggtgtaaggaagggatcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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