Basic Information
VIS ID
TVIS30006677
Fusion event
HIV-FANCI integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
89801942/89258711 (Hg38)
End
89801942/89258711 (Hg38)
Orient
-
Location type
Exonic
Target gene
FANCI
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-1-3p ; hsa-mir-192-5p ; hsa-mir-21-5p ; hsa-mir-505-3p ; hsa-let-7c-5p
Nearest miRNA
hsa-mir-10393/Upstream/646777; hsa-mir-1302-10/Downstream/68028;
Nearest TSS
ENST00000557528/Upstream/11109; ENST00000570225/Downstream/3127;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/14251, chr15-CpG: 51/Downstream/74448
Upstream sequence
CGTGACAGAAGAGTACTTTTTCATATTGAGTGTTTAGGTCATTGGGGTAAAAGACTGTTGCCAGAGACTTGTACCTTTTTCTTTCTTTGCAGTTGACTAA
Downstream sequence
TCTCCTTCAGAATCAAGCAGTGAAAGGAAAAGTTGCTGGAGCACTCCTGAGAGCCATCTTCAAAGGTAATAATAATTAATGTCACTTCTGTCTGTCTCCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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