Basic Information
VIS ID
TVIS30006678
Fusion event
HIV-FANCI integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
89809150/89265919 (Hg38)
End
89809150/89265919 (Hg38)
Orient
+
Location type
Intronic
Target gene
FANCI
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-1-3p ; hsa-mir-192-5p ; hsa-mir-21-5p ; hsa-mir-505-3p ; hsa-let-7c-5p
Nearest miRNA
hsa-mir-10393/Upstream/653985; hsa-mir-1302-10/Downstream/60820;
Nearest TSS
ENST00000557528/Upstream/2482; ENST00000564350/Downstream/12768;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/21459, chr15-CpG: 51/Downstream/67240
Upstream sequence
ccGGATTTTTTGTTTTTTAAGCAaacatttgtaggatgttcattctgtgccaggggctattctaagcactttaaacctcacaaccctattttacctctac
Downstream sequence
tttatggatatggaaatcgagagacaaagaatttagttagtttgGCTTGAGCAATTTATTAGAGGTGGtttcttatttcttttttttttttttttttaag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate