Basic Information
VIS ID
TVIS30006679
Fusion event
HIV-SEMA4B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
90732018/90188786 (Hg38)
End
90732018/90188786 (Hg38)
Orient
+
Location type
Intronic
Target gene
SEMA4B
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-let-7e-5p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-1236-3p ; hsa-mir-125a-5p ; hsa-mir-125b-5p ; hsa-mir-1273a ; hsa-mir-345-3p ; hsa-mir-3714 ; hsa-mir-4319 ; hsa-mir-4732-3p ; hsa-mir-605-3p ; hsa-mir-6515-3p ; hsa-mir-670-5p ; hsa-mir-6808-5p ; hsa-mir-6893-5p ; hsa-mir-940
Nearest miRNA
hsa-mir-10393/Upstream/181945; hsa-mir-1302-10/Downstream/2715613;
Nearest TSS
ENST00000557528/Upstream/3823; ENST00000560263/Downstream/1558;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/3448, chr15-CpG: 115/Downstream/12113
Upstream sequence
tgttttttgagacagagtctcgctcactctgggtgcagtggcgctatctcggctcactgcaagctccgccccccggattcatgccattcttctgcctcag
Downstream sequence
cctcccgagtagctgggactacaggcacccaccaccacgcccggctaatttttttgtatttttagtagagacggggtttcaccatgttagccaggatggt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate