Basic Information
VIS ID
TVIS30006689
Fusion event
HIV-chr15 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
91380352/90837122 (Hg38)
End
91380352/90837122 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10393/Upstream/830281; hsa-mir-1302-10/Downstream/2067277;
Nearest TSS
ENST00000557528/Upstream/28351; ENST00000559353/Downstream/31470;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/17694, chr15-CpG: 17/Downstream/33959
Nearby gene
BLM(No orient, 21660)
Nearest cancer related gene
BLM(TSG, No orient, 21660)
Upstream sequence
tacagacggggcttcaccatgttggccatgctggtctcgaactcctgacctcaagtgatctgccgcctcggcctcacagaatgctgagttacaggcgtga
Downstream sequence
gccaccacacccagccGACCACTGCTTGGCTTTTGCAGGTGCTTTTACCTCCACCAGAATCTCCTCCTCGCCCCTAGGCTTCGAGGCCTCCTTTTCTGGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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