Basic Information
VIS ID
TVIS30006690
Fusion event
HIV-chr15 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
93336909/92793679 (Hg38)
End
93336909/92793679 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10393/Upstream/2786838; hsa-mir-1302-10/Downstream/110720;
Nearest TSS
ENST00000557528/Upstream/5207; ENST00000614509/Downstream/14772;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/78687, chr15-CpG: 79/Downstream/15431
Nearby gene
ASB9P1(No orient, 1805)
Upstream sequence
tggatcacctgaggtcaggagttccagaccagcctggccaacatgatgaaaccctgtctgtactaaaaatacaaaaaaaaaaattagctgggcttggtgc
Downstream sequence
catgcacctgtaatcccagctactcaggaggctgaggcaggagaactgcttaaaccggggaggcagagattgcggcgagcagagatcacgccactgcact
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate