Basic Information
VIS ID
TVIS30006692
Fusion event
HIV-LOC107983974 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
94152526/93609297 (Hg38)
End
94152526/93609297 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107983974
Nearest miRNA
hsa-mir-10393/Upstream/704822; hsa-mir-1302-10/Downstream/2723964;
Nearest TSS
ENST00000557528/Upstream/19430; ENST00000556030/Downstream/219877;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/176547, chr15-CpG: 46/Downstream/622089
Upstream sequence
CTTTCTAATATTGCTTTTTCTGTACAATATTTTCTTTATGTTTGATAGGGCTTTGCAGCCAAGCTGATTCTAACAGGGCCGACTGTTGGCTTTCTACTCA
Downstream sequence
TTTATCCTCAGTTTTAATATTACCGGCATACTTTTTTGTTGTTGTTTGTTTTGCCTTGTTTTGATCTTAAAATTTGTAGGCTCAAGAATAAACAGTTTAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate