Basic Information
VIS ID
TVIS30006694
Fusion event
HIV-chr15 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q26.2
Reference genome
GRCh37/hg19
Start
95186385/94643156 (Hg38)
End
95186385/94643156 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10393/Upstream/1738681; hsa-mir-1302-10/Downstream/1690105;
Nearest TSS
ENST00000557528/Upstream/43142; ENST00000554837/Downstream/213855;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/411406, chr15-CpG: 70/Downstream/201616
Nearby gene
MCTP2(No orient, 159204)
Upstream sequence
taataacagaggtgtaaccgatttattactttgttaatatacaaaaggaaaaatgtttatttattattatttcaatagatgtataaataatgttttgtga
Downstream sequence
aattcaatacctattcatgatttattggaaataacactttcggttaggtaggaacagaatatgtcttcttttccccaataaagggtatctttcaaaaagc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate