Basic Information
VIS ID
TVIS30006702
Fusion event
HIV-TARSL2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
102222091/101681888 (Hg38)
End
102222091/101681888 (Hg38)
Orient
+
Location type
Intronic
Target gene
TARSL2
miRNAs that regulate target gene
hsa-mir-186-5p
Nearest miRNA
hsa-mir-10393/Upstream/2897386; hsa-mir-1302-10/Downstream/278571;
Nearest TSS
ENST00000557528/Upstream/17446; ENST00000328882/Downstream/19277;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/28746, chr15-CpG: 75/Downstream/42099
Upstream sequence
tttccaaacaccatcacattgggggttaggacttcaacatataaattttgggagtcacaattcagtccatagcaacatatttgtcagtcttatcccaaag
Downstream sequence
tactatcatatgttttgagatgctattacaaattgtttcttatttgcaatttccaagggtttattattatgaaatgcatatacaattcatttttgtatgt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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