Basic Information
VIS ID
TVIS30006710
Fusion event
HIV-UBE2I integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
1367149/1317148 (Hg38)
End
1367149/1317148 (Hg38)
Orient
+
Location type
Intronic
Target gene
UBE2I
miRNAs that regulate target gene
hsa-mir-30e-5p ; hsa-mir-200c-3p ; hsa-mir-188-5p ; hsa-mir-30c-5p ; hsa-mir-1-3p ; hsa-let-7b-5p ; hsa-mir-324-5p ; hsa-mir-214-3p ; hsa-mir-195-3p ; hsa-mir-361-3p ; hsa-mir-4426 ; hsa-mir-4647 ; hsa-mir-4662b ; hsa-mir-4707-3p ; hsa-mir-566 ; hsa-mir-652-3p ; hsa-mir-6789-3p ; hsa-mir-7108-3p
Nearest miRNA
hsa-mir-3176/Upstream/546871; hsa-mir-11401/Downstream/417837;
Nearest TSS
ENST00000527434/Upstream/1823; ENST00000568989/Downstream/2733;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/2653, chr16-CpG: 41/Downstream/1904
Upstream sequence
aatccaggaggcgggtccagtgagccgagatcgcgccactacactccagcctgggcagcagggcaagaccctgtctcaaaaaaaaaaaaagaaaagaaaa
Downstream sequence
GTAGCACAGGACCTGGTAAAGGAAACAAAGCTAAATAATAAATATAAAAATGAAGTCGAGATTGAGGTACACAAATCTGCTTTTATATCATTTCAGCGAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate