Basic Information
VIS ID
TVIS30006724
Fusion event
HIV-MMP25 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
3101157/3051156 (Hg38)
End
3101157/3051156 (Hg38)
Orient
+
Location type
Intronic
Target gene
MMP25
miRNAs that regulate target gene
hsa-mir-181c-3p ; hsa-mir-16-5p
Nearest miRNA
hsa-mir-1225/Upstream/519151; hsa-mir-11401/Downstream/434225;
Nearest TSS
ENST00000527434/Upstream/3625; ENST00000575441/Downstream/4863;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/4124, chr16-CpG: 140/Downstream/7038
Upstream sequence
ttgggattataagcatgagccaccactcctggccAATAATTAGGTTTAAATTATATTTACTGATGGAGGCTTtatcagctgggaggtctccagagaaaca
Downstream sequence
aaaccaacaggatgtgtgtgtgtgtgcacgtgtgtgtgggatgtgtgtgtgtgtgtatgtgtgtggggggggtgtgtgtgtgcgtgtgtgtaaagagatt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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