Basic Information
VIS ID
TVIS30006728
Fusion event
HIV-LOC105371058 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
3135558/3085557 (Hg38)
End
3135558/3085557 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105371058
Nearest miRNA
hsa-mir-1225/Upstream/553552; hsa-mir-11401/Downstream/399824;
Nearest TSS
ENST00000527434/Upstream/6867; ENST00000444510/Downstream/1530;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/25953, chr16-CpG: 146/Downstream/3475
Nearby gene
ZSCAN10(No orient, 3333)
Upstream sequence
gaccctgtttctctagctgtgcagctgcaaggtcactaaacagataatctcaagtcataacacaagttgttccttaaaaagtaagaaataatgtaatgca
Downstream sequence
tgtcttgactgaataactatctttgtttctcgcttctgtaatatgcttcccccagcacaaatctccccccatcccacaaaatgcttaaaaggtaaccgga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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