Basic Information
VIS ID
TVIS30006731
Fusion event
HIV-NAA60 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
3496734/3446734 (Hg38)
End
3496734/3446734 (Hg38)
Orient
+
Location type
Intronic
Target gene
NAA60
miRNAs that regulate target gene
hsa-let-7e-5p
Nearest miRNA
hsa-mir-1225/Upstream/914729; hsa-mir-11401/Downstream/38647;
Nearest TSS
ENST00000527434/Upstream/2946; ENST00000571696/Downstream/9997;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/3165, chr16-CpG: 122/Downstream/10811
Upstream sequence
gacagtctcactgttgcccaggctggagagcagtggtgcgatctctgctcactgcaacttccgcctcctgggttcaagtgattcttgtgcctcagctacc
Downstream sequence
agagtagatgagatgatgggcagatgccaccacaaccatttaatttttgtatttttagtagagatgcagttttgccatgttggccaggctggtctcaaac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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