Basic Information
VIS ID
TVIS30006735
Fusion event
HIV-DNASE1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
3665258/3615257 (Hg38)
End
3665258/3615257 (Hg38)
Orient
-
Location type
Intronic
Target gene
DNASE1
Nearest miRNA
hsa-mir-1225/Upstream/129788; hsa-mir-11401/Downstream/1056061;
Nearest TSS
ENST00000527434/Upstream/3529; ENST00000570761/Downstream/27623;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/3483, chr16-CpG: 38/Downstream/59086
Nearby gene
SLX4(No orient, 3673)
Upstream sequence
attctgatggtctcaagattgagaagcactgCATTTAACCAGCACCAACTGAACAAACACTGTAGGCTAAGTATAAGAGAGATGGCAAGAGCTGGGTCAG
Downstream sequence
GGTGGTGCATGGGATTTCCAATTATACATAATTCCTCCCTTCAATGAACAAAGCCATCCATAACTGGGGCACCTGCTTCTTTGGGCTAAAGGTGAACAAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate