Basic Information
VIS ID
TVIS30006736
Fusion event
HIV-TRAP1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
3753432/3703431 (Hg38)
End
3753432/3703431 (Hg38)
Orient
-
Location type
Intronic
Target gene
TRAP1
miRNAs that regulate target gene
hsa-mir-16-5p ; hsa-mir-1180-3p ; hsa-mir-361-3p ; hsa-mir-769-3p ; hsa-mir-615-3p ; hsa-mir-193b-3p ; hsa-mir-424-5p ; hsa-mir-324-5p ; hsa-mir-331-3p ; hsa-mir-342-3p ; hsa-mir-186-5p ; hsa-mir-149-5p ; hsa-mir-222-3p ; hsa-mir-197-3p ; hsa-mir-196a-5p ; hsa-mir-92a-3p ; hsa-mir-26a-5p ; hsa-mir-25-3p ; hsa-mir-17-5p
Nearest miRNA
hsa-mir-1225/Upstream/217962; hsa-mir-11401/Downstream/967887;
Nearest TSS
ENST00000527434/Upstream/12298; ENST00000571169/Downstream/14081;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/28583, chr16-CpG: 103/Downstream/13545
Upstream sequence
TAACAAGTAAACTACAGACGTAAGGTAACACTTGGAAAGCATGGGATTATAGAGAAATGGGACAATGCTGTGTAATGTGTGCTGATGCTGAATTACCTCT
Downstream sequence
AACACAAAGAAAAAACACTAGAGGTAGAACAGCGGTTTGCACACACTACCATGGTGTTCAAATGCATATACATGTTATGTGATACATGCATGCATAGCTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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