Basic Information
VIS ID
TVIS30006757
Fusion event
HIV-LOC101927026 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
9550609/9456752 (Hg38)
End
9550609/9456752 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC101927026
Nearest miRNA
hsa-mir-1225/Upstream/3824186; hsa-mir-11401/Downstream/1849688;
Nearest TSS
ENST00000527434/Upstream/1247; ENST00000570038/Downstream/9903;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/363920, chr16-CpG: 282/Downstream/723334
Nearby gene
LINC01195(No orient, 1247)
Upstream sequence
agcctgggcaatatagcaagaccctatctctaccaaaaagaaattaactgggcatagtggcatgtgcctgttgtcccagctacttgggaggctgaggtgg
Downstream sequence
gaggatcaattgaacataggaggttgaggctgcagtgagctgtgatcacaccattgcactcttgcctgggcaaaagggcgagaccttgtctcaaaaaaga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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