Basic Information
VIS ID
TVIS30006759
Fusion event
HIV-GRIN2A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.2
Reference genome
End
10117209/10023352 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-1225/Upstream/4390786; hsa-mir-11401/Downstream/1283088;
Nearest cancer related gene
GRIN2A(TSG, No orient, 0)
Upstream sequence
CAAATCTGAAATAACTCATCCAACTGAGGCAGGGCTCTATAAACAACAGACAAGTAAAATACATTGAATAAATATTACATAATCTATTTTCTTTAGTGGT
Downstream sequence
TGTGTCTGTATATATGTGGGTACATTCAGGTGTGGtttttacaatgacccttcgaagtgggtattataattacaactttatatgtgagaaaactaaggtt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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