Basic Information
VIS ID
TVIS30006768
Fusion event
HIV-ZC3H7A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.13
Reference genome
GRCh37/hg19
Start
11870607/11776751 (Hg38)
End
11870607/11776751 (Hg38)
Orient
+
Location type
Exonic
Target gene
ZC3H7A
miRNAs that regulate target gene
hsa-mir-93-5p
Nearest miRNA
hsa-mir-1225/Upstream/470224; hsa-mir-11401/Downstream/943570;
Nearest TSS
ENST00000527434/Upstream/231; ENST00000615722/Downstream/5801;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/33515, chr16-CpG: 88/Downstream/19717
Upstream sequence
AAGCAGGTTGATGGATGACTGGAAAATTTAACTCTTTAAATGCCATTTATTATGATGTAAATGGTTACGATGTAAACAAATAAACTATAAATTCCATACC
Downstream sequence
TGAGGCACTGCTAAGGAGCACTTTGCTACAGCATCGTAAGCCTTTTTGTATCTTCCTAAATCACTTAAAGCCTTAGATTTCCGATACAGAGCTTTGCAGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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