Basic Information
VIS ID
TVIS30006778
Fusion event
HIV-BMERB1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.11
Reference genome
GRCh37/hg19
Start
15565790/15471933 (Hg38)
End
15565790/15471933 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA16A
Target gene
BMERB1
miRNAs that regulate target gene
hsa-mir-1283 ; hsa-mir-6805-3p ; hsa-mir-5691 ; hsa-mir-106a-3p ; hsa-mir-6879-3p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-564 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-3194-3p ; hsa-mir-215-3p ; hsa-mir-6773-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-500b-3p ; hsa-mir-183-5p ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-5197-5p
Nearest miRNA
hsa-mir-1225/Upstream/316931; hsa-mir-11401/Downstream/139097;
Nearest TSS
ENST00000527434/Upstream/37345; ENST00000563380/Downstream/30333;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/36704, chr16-CpG: 43/Downstream/171016
Upstream sequence
tcccaaagtgctaggattaaaggcatgagccactgcacccagccctctttcttcatataagcatttagtgctattaattttacactgagtacagtctctg
Downstream sequence
tatcacatatgttttgatatgttgtattttcattttcatttggttctattctttaagttttgttttagaattcttctttgacctagagattatttagaag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate