Basic Information
VIS ID
TVIS30006779
Fusion event
HIV-MARF1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.11
Reference genome
GRCh37/hg19
Start
15718599/15624742 (Hg38)
End
15718599/15624742 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA16A
Target gene
MARF1
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-155-5p ; hsa-mir-183-5p
Nearest miRNA
hsa-mir-1225/Upstream/13647; hsa-mir-11401/Downstream/18552;
Nearest TSS
ENST00000527434/Upstream/1592; ENST00000570727/Downstream/14491;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/189513, chr16-CpG: 43/Downstream/18207
Upstream sequence
agaagagtgatgggagacttactttgtgcatttcagtactatctgaattcttttcaacaaacataCTATTTCATAATCCTTCCTATTACATGTAACCACC
Downstream sequence
CCCATGGGTCAAGAAGCTGGACTCACCTAGAAGACCAAGACTGAGATGCGAGCAGAGGACTGACTTGCCTGGATGCAACTAACTTGCTAAAAGCAGACGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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