Basic Information
VIS ID
TVIS30006782
Fusion event
HIV-LOC107984869 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.11
Reference genome
GRCh37/hg19
Start
16031780/15937923 (Hg38)
End
16031780/15937923 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA16A
Target gene
LOC107984869
Nearest miRNA
hsa-mir-1225/Upstream/294551; hsa-mir-11401/Downstream/362236;
Nearest TSS
ENST00000527434/Upstream/49298; ENST00000574224/Downstream/11654;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/49108, chr16-CpG: 64/Downstream/11438
Nearby gene
ABCC1(No orient, 11654)
Upstream sequence
TTCTTTAAACTGAATTCTAAGCAGTTTTCAGTTTTAACTCACTACAGTCTCCAtgctatattctgaatgtttatatcccccaaaattcatatgttgaaat
Downstream sequence
cctaacccctaaggtgatggtattaggaggtgagcctttgagagatgattaggtcttgacagtggagttctcatgactgggattagtgcccttataaaag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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