Basic Information
VIS ID
TVIS30006787
Fusion event
HIV-XYLT1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
17308975/17215118 (Hg38)
End
17308975/17215118 (Hg38)
Orient
-
Location type
Intronic
Target gene
XYLT1
miRNAs that regulate target gene
hsa-mir-16-5p
Nearest miRNA
hsa-mir-1225/Upstream/846176; hsa-mir-11401/Downstream/1128895;
Nearest TSS
ENST00000527434/Upstream/80614; ENST00000564852/Downstream/43910;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/840520, chr16-CpG: 103/Downstream/255169
Upstream sequence
gtgaccgtattggagatgtggcctttaaggaggtgattaaagttaaatgaagttgggccgagtgtggcggctcatgcctgtaatcccagcactttgggag
Downstream sequence
gccgaagtgggtgggtcacttgaagtcaggagttgaagaccagcctggccaatatggtaaaaacttgtctctattaaaaatacaaaaattagccaggcat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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