Basic Information
VIS ID
TVIS30006799
Fusion event
HIV-METTL9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p12.2
Reference genome
GRCh37/hg19
Start
21631643/21620322 (Hg38)
End
21631643/21620322 (Hg38)
Orient
-
Location type
Intronic
Target gene
METTL9
miRNAs that regulate target gene
hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-26b-5p
Nearest miRNA
hsa-mir-1225/Upstream/114187; hsa-mir-11401/Downstream/2582794;
Nearest TSS
ENST00000527434/Upstream/2424; ENST00000564733/Downstream/31547;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/19949, chr16-CpG: 37/Downstream/43633
Upstream sequence
ACATAAGGAAGGTGTGAGTTTGAACTGAGTGATTTGAAAGCCCCTTAGCTTTAGCAAGCTGTCTCAGATAAGGTTCTGGTGGGTCTGCATGGTGATAATT
Downstream sequence
GACATGTTTTCCTTCAGTTAGAGATTAATTCGGCATTTCAAAACTTAGAATGCTTTGACCTTTGTTATAACAGTGGCTTAAGTCAGGCTGAATTCCTAAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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