Basic Information
VIS ID
TVIS30006804
Fusion event
HIV-CHP2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p12.2
Reference genome
GRCh37/hg19
Start
23767609/23756288 (Hg38)
End
23767609/23756288 (Hg38)
Orient
-
Location type
Intronic
Target gene
CHP2
Nearest miRNA
hsa-mir-1225/Upstream/2250153; hsa-mir-11401/Downstream/446828;
Nearest TSS
ENST00000527434/Upstream/1661; ENST00000498058/Downstream/79658;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/740, chr16-CpG: 106/Downstream/79332
Upstream sequence
TCACTGTGAGTTTGTGAGGACCTGCACAAGTGAGAATGCAGATGTACCCACACCAGGGACAGGCTCCAGGGATCTCCCACTCCCTTCCTGAGGGCATTGA
Downstream sequence
CAACCTCCCCCCTCCTCCAAGGTGGGGGGAAGGAAGGTGGCTGCTGGAAGAGAGCCAGGGAAGACCTACCTTCCTTTCCCCCTCCCACCCTCTCCCCAGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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