VISDB Viral Integration Site DataBase

VIS ID

TVIS30006805

Fusion event

HIV-PRKCB integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

p12.2

Reference genome

Start

End

23854587/23843266 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-142-5p ; hsa-mir-3650 ; hsa-mir-4796-3p ; hsa-mir-5590-3p ; hsa-mir-6867-5p ; hsa-mir-1261 ; hsa-mir-3614-5p ; hsa-mir-381-3p ; hsa-mir-300 ; hsa-mir-890 ; hsa-mir-574-5p ; hsa-mir-4455 ; hsa-mir-4999-5p ; hsa-mir-4718 ; hsa-mir-1537-5p ; hsa-mir-4742-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-6868-3p ; hsa-mir-627-3p ; hsa-mir-1248 ; hsa-mir-3667-3p ; hsa-mir-6734-3p ; hsa-mir-6074 ; hsa-mir-4753-3p ; hsa-mir-6809-3p ; hsa-mir-130b-5p ; hsa-mir-3180-5p ; hsa-mir-6780a-3p ; hsa-mir-6881-3p ; hsa-mir-525-5p ; hsa-mir-520a-5p ; hsa-mir-877-3p ; hsa-mir-488-5p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-4778-3p ; hsa-mir-184 ; hsa-mir-33a-5p

Nearest miRNA

hsa-mir-1225/Upstream/2337131; hsa-mir-11401/Downstream/359850;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/6485, chr16-CpG: 44/Downstream/412453

Nearest cancer related gene

PRKCB(TSG, No orient, 0)

Upstream sequence

CCTAGAAACTTATAATATGGCCCCATGCACTTCAGGTTGAATTTTCTTAGTAAAATCATAAAGAGGTCCATTTTTTCAAAAAATCACCAAGTCAGGCTGC

Downstream sequence

AAGTTTAGAGGTTACTTCTATTGTTTCACTTCTCTTTCTTCCCAGAAGCAGACCCCAGAGACCTGTGAGCCAAACTCCACTCACCTTTTAGCTTATTCTA