VISDB Viral Integration Site DataBase

VIS ID

TVIS30006808

Fusion event

HIV-RBBP6 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

p12.1

Reference genome

Start

End

24561964/24550643 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-1254 ; hsa-mir-149-5p ; hsa-let-7b-5p ; hsa-mir-323a-5p ; hsa-mir-876-3p ; hsa-mir-4747-3p ; hsa-mir-1295b-3p ; hsa-mir-5692a ; hsa-mir-548c-3p ; hsa-mir-3129-3p ; hsa-mir-5583-5p ; hsa-mir-6793-3p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-16-2-3p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-195-3p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-3942-5p ; hsa-mir-3944-5p ; hsa-mir-4703-5p ; hsa-mir-6838-5p ; hsa-mir-7856-5p ; hsa-mir-193a-5p ; hsa-mir-1182 ; hsa-mir-520a-3p ; hsa-mir-372-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-520c-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302a-3p ; hsa-mir-520b ; hsa-mir-373-3p ; hsa-mir-107 ; hsa-mir-103a-3p

Nearest miRNA

hsa-mir-1225/Upstream/347412; hsa-mir-11401/Downstream/1474594;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/10264, chr16-CpG: 97/Downstream/178702

Upstream sequence

TTTAAACTAATTCAGATGAAGTTTTATTTCTTGAAAACAGTTATTTCCTTTTTGTTTATTAGCATGTGTATAAACACAAATCACATGTTCATAAATAAAG

Downstream sequence

TTAACATTCTTTTAGCCTTGTGTGTTCCGGCATGTCTGTATTACATTTATAAGAAGCAGTTTATTTAAGCTTATTTAGGTTTCTCTTTTCTTTTCTTTTT