Basic Information
VIS ID
TVIS30006836
Fusion event
HIV-TBC1D10B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
30373536/30362215 (Hg38)
End
30373536/30362215 (Hg38)
Orient
-
Location type
Intronic
Target gene
TBC1D10B
miRNAs that regulate target gene
hsa-mir-151a-5p ; hsa-mir-324-5p ; hsa-mir-149-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6878-5p ; hsa-mir-4663 ; hsa-mir-6823-3p ; hsa-mir-2114-3p ; hsa-mir-6751-3p ; hsa-mir-1199-5p ; hsa-mir-6871-5p ; hsa-mir-30e-5p ; hsa-mir-30d-5p ; hsa-mir-30c-5p ; hsa-mir-30b-5p ; hsa-mir-30a-5p
Nearest miRNA
hsa-mir-1225/Upstream/762950; hsa-mir-11401/Downstream/141704;
Nearest TSS
ENST00000527434/Upstream/2039; ENST00000563718/Downstream/2997;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/6775, chr16-CpG: 89/Downstream/7541
Upstream sequence
tgggattacaggcgtgggccaccacgcctggccttttaaaaatatttttagtagagacggggtttcaccatgttggccaggctggtcttgaactcctgac
Downstream sequence
ctcagatgatctgcccgccttggcctcccaaagtgctgggattacaggtgtgagccaccgcacccagccacaaaactgtttttaacatggtcactaatga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate