Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene305287993040729730431108304236193043007530444034304488093045726430460114304436313044618130416604304190143042870330431099304503083045139530460567304615083046590730466769304498403045000930426040304261893044918030449329304375403043766930468048
Basic Information
VIS ID
TVIS30006842
Fusion event
HIV-chr16 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
30479369/30468048 (Hg38)
End
30479369/30468048 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1225/Upstream/868783; hsa-mir-11401/Downstream/35871;
Nearest TSS
ENST00000527434/Upstream/21867; ENST00000562652/Downstream/4610;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/22298, chr16-CpG: 35/Downstream/6013
Nearby gene
ITGAL(No orient, 4614)
Upstream sequence
CAGTACAGATGATAGATAATCCGTCTGAAAAAGGCTTCCTCAGGGCAGTGACATCTTTCCAGGTTGAACGGGATTTCTTCACCGCACAGGGAGAGTCTGA
Downstream sequence
AGATCCTTCCCAATTTCTTGTAAACGAATATAGTTCCTTCACTCTGTTGTGTTTTAAATATTTTTATGTTTTGgtttgtttgtttgtttgtttgtGTATA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate