Basic Information
VIS ID
TVIS30006853
Fusion event
HIV-FUS integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
End
31193794/31182473 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-1225/Upstream/288488; hsa-mir-11401/Downstream/2981105;
Nearest cancer related gene
FUS(TSG, No orient, 0)
Upstream sequence
TGTGATTGTATTTTTCTTTTGCAGATTATACCCAACAAGCAACCCAAAGGTGAGTGCTATTTTTGGGCTTCCAGAGTTTGTAGAGGGCAAGGGTGGTCAC
Downstream sequence
GCCATGTTTTCTGATCACGCTGGTTTTCCTTTTATTTAGCTATGGGGCCTACCCCACCCAGCCCGGGCAGGGCTATTCCCAGCAGAGCAGTCAGCCCTAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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