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VISDB
Viral Integration Site DataBase
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TVIS30006853
Basic Information
VIS ID
TVIS30006853
Fusion event
HIV-FUS integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
31193794/31182473 (Hg38)
End
31193794/31182473 (Hg38)
Orient
-
Location type
Intronic
Target gene
FUS
miRNAs that regulate target gene
hsa-mir-197-3p
;
hsa-mir-664a-3p
;
hsa-mir-1296-5p
;
hsa-mir-615-3p
;
hsa-mir-331-3p
;
hsa-mir-125b-5p
;
hsa-mir-221-3p
;
hsa-mir-181b-5p
;
hsa-mir-10a-5p
;
hsa-mir-1260b
;
hsa-mir-661
;
hsa-mir-6860
;
hsa-mir-612
;
hsa-mir-5189-5p
;
hsa-mir-3187-5p
;
hsa-mir-1285-3p
;
hsa-mir-939-3p
;
hsa-mir-6849-3p
;
hsa-mir-4482-5p
;
hsa-mir-3130-5p
;
hsa-mir-1273e
;
hsa-mir-6514-3p
;
hsa-mir-6811-3p
;
hsa-mir-214-5p
;
hsa-mir-7703
;
hsa-mir-6720-5p
;
hsa-mir-6512-3p
;
hsa-mir-1255b-5p
;
hsa-mir-1255a
;
hsa-mir-6744-5p
;
hsa-mir-3116
;
hsa-mir-1254
;
hsa-mir-4252
;
hsa-mir-4537
;
hsa-mir-4793-3p
;
hsa-mir-766-3p
;
hsa-mir-508-5p
;
hsa-mir-1255b-2-3p
;
hsa-mir-1273g-3p
;
hsa-mir-340-3p
;
hsa-mir-4293
;
hsa-mir-4432
;
hsa-mir-4434
;
hsa-mir-4516
;
hsa-mir-451b
;
hsa-mir-4522
;
hsa-mir-4531
;
hsa-mir-455-3p
;
hsa-mir-4684-5p
;
hsa-mir-4696
;
hsa-mir-4786-5p
;
hsa-mir-4802-3p
;
hsa-mir-5703
;
hsa-mir-6499-3p
;
hsa-mir-6510-3p
;
hsa-mir-6516-5p
;
hsa-mir-6771-3p
;
hsa-mir-6807-5p
;
hsa-mir-6827-3p
Nearest miRNA
hsa-mir-1225/Upstream/288488; hsa-mir-11401/Downstream/2981105;
Nearest TSS
ENST00000527434/Upstream/2322;
ENST00000487974/Downstream/812;
Nearest CpG islands
None/Target,
chr16-CpG: 29/Upstream/1569
,
chr16-CpG: 63/Downstream/19772
Nearest cancer related gene
FUS
(TSG, No orient, 0)
Upstream sequence
TGTGATTGTATTTTTCTTTTGCAGATTATACCCAACAAGCAACCCAAAGGTGAGTGCTATTTTTGGGCTTCCAGAGTTTGTAGAGGGCAAGGGTGGTCAC
Downstream sequence
GCCATGTTTTCTGATCACGCTGGTTTTCCTTTTATTTAGCTATGGGGCCTACCCCACCCAGCCCGGGCAGGGCTATTCCCAGCAGAGCAGTCAGCCCTAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Central Memory CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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