VISDB Viral Integration Site DataBase

VIS ID

TVIS30006854

Fusion event

HIV-FUS integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

p11.2

Reference genome

Start

End

31204194/31192873 (Hg38)

Orient

-

Location type

UTR3

Target gene

miRNAs that regulate target gene

hsa-mir-197-3p ; hsa-mir-664a-3p ; hsa-mir-1296-5p ; hsa-mir-615-3p ; hsa-mir-331-3p ; hsa-mir-125b-5p ; hsa-mir-221-3p ; hsa-mir-181b-5p ; hsa-mir-10a-5p ; hsa-mir-1260b ; hsa-mir-661 ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-939-3p ; hsa-mir-6849-3p ; hsa-mir-4482-5p ; hsa-mir-3130-5p ; hsa-mir-1273e ; hsa-mir-6514-3p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-1255b-5p ; hsa-mir-1255a ; hsa-mir-6744-5p ; hsa-mir-3116 ; hsa-mir-1254 ; hsa-mir-4252 ; hsa-mir-4537 ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-508-5p ; hsa-mir-1255b-2-3p ; hsa-mir-1273g-3p ; hsa-mir-340-3p ; hsa-mir-4293 ; hsa-mir-4432 ; hsa-mir-4434 ; hsa-mir-4516 ; hsa-mir-451b ; hsa-mir-4522 ; hsa-mir-4531 ; hsa-mir-455-3p ; hsa-mir-4684-5p ; hsa-mir-4696 ; hsa-mir-4786-5p ; hsa-mir-4802-3p ; hsa-mir-5703 ; hsa-mir-6499-3p ; hsa-mir-6510-3p ; hsa-mir-6516-5p ; hsa-mir-6771-3p ; hsa-mir-6807-5p ; hsa-mir-6827-3p

Nearest miRNA

hsa-mir-1225/Upstream/298888; hsa-mir-11401/Downstream/2970705;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/11969, chr16-CpG: 63/Downstream/9372

Nearest cancer related gene

FUS(OG, No orient, 0)

Upstream sequence

ttggccaggctggtctcttaactcctgacctcaggtgatccacctgccttggcctcccaaagtgctggaattacaggcatgagccgctgcatctggccAT

Downstream sequence

CCTCTCAAATTTTCAAGTGTTCCACAAGTATGTTCTCTACTGAAGAGTTGCTGCATCCTTGAATCTTGGGTGATTTGAGGCACAGAAACTATGACtttat