Basic Information
VIS ID
TVIS30006856
Fusion event
HIV-ITGAM integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
31299667/31288346 (Hg38)
End
31299667/31288346 (Hg38)
Orient
+
Location type
Intronic
Target gene
ITGAM
Nearest miRNA
hsa-mir-1225/Upstream/394361; hsa-mir-11401/Downstream/2875232;
Nearest TSS
ENST00000527434/Upstream/12754; ENST00000561838/Downstream/36332;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/63563, chr16-CpG: 53/Downstream/42785
Upstream sequence
acatgcagggcttgttcaatatcccaaataccaatattgcagaaatggacaagctgatcctgaagtccatatggaaacagaagggacccatatattagac
Downstream sequence
ttatacctaaatgtttcatgacctttggcactattgtaaattgtactggtttttaaatttaaatttccaattgttggaacagaacagagccctcagaaat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate