Basic Information
VIS ID
TVIS30006857
Fusion event
HIV-ITGAM integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
31329648/31318327 (Hg38)
End
31329648/31318327 (Hg38)
Orient
-
Location type
Intronic
Target gene
ITGAM
Nearest miRNA
hsa-mir-1225/Upstream/424342; hsa-mir-11401/Downstream/2845251;
Nearest TSS
ENST00000527434/Upstream/42735; ENST00000561838/Downstream/6351;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/93544, chr16-CpG: 53/Downstream/12804
Upstream sequence
atgatcctttttattgctatggcatcagttgtatgttctttcatttataattttacttatctgttgtttctgttttttctccctttttccttggtctacc
Downstream sequence
taaaagcttgtcagttctttttttttttttttttgagatggagtctcactctgttgcccaggctggagtgcagtggcatgatcacagctcactgcattct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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