Basic Information
VIS ID
TVIS30006864
Fusion event
HIV-chr16 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
49048112/49014201 (Hg38)
End
49048112/49014201 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1225/Upstream/14850528; hsa-mir-11401/Downstream/1278415;
Nearest TSS
ENST00000527434/Upstream/373728; ENST00000565146/Downstream/145307;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/202848, chr16-CpG: 24/Downstream/261011
Nearby gene
CBLN1(No orient, 263717)
Upstream sequence
CTAAGCAAAACAGCTAGACCAGAGCCTTAAACCCTACTAACAatgagacccaccaggaaagcttaaaaaataccaatgcccaggacctaccctggctccc
Downstream sequence
tgagtccaagtctgtaggagagggtgctaggatctggactattagaagtttccagggcagttccagtgacatatcagtgctgagatcctctgGGATGGAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate