Basic Information
VIS ID
TVIS30006870
Fusion event
HIV-chr16 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
52296166/52262254 (Hg38)
End
52296166/52262254 (Hg38)
Orient
+
Location type
Intronic
Target gene
CASC22 ; LOC105371261
Nearest miRNA
hsa-mir-1225/Upstream/1519877; hsa-mir-11401/Downstream/3983266;
Nearest TSS
ENST00000527434/Upstream/3690; ENST00000628396/Downstream/9318;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/1105905, chr16-CpG: 125/Downstream/283470
Upstream sequence
TCTTTTCCTGTGTCTCTCAGCCTCAGTTGTTCGATCTGTAACACTGGATTCCAGCTTCCTGTTTAATGATTCCATAGATGAGGATGAAATGCAATTACAA
Downstream sequence
ATGGGAAAATATCCGTAGATGACACAACACCATAAATGTATACAGTCACCATCTAGATAGTTGGGTGAATGTTTCACATTGGTGGCTTAGACTCAGTGAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate