VISDB Viral Integration Site DataBase

VIS ID

TVIS30006873

Fusion event

HIV-NUDT21 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

q13

Reference genome

Start

End

56465112/56431200 (Hg38)

Orient

+

Location type

UTR3

Target gene

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-1296-5p ; hsa-mir-320a ; hsa-mir-20a-5p ; hsa-let-7c-5p ; hsa-mir-5003-3p ; hsa-mir-1273e ; hsa-mir-5585-3p ; hsa-mir-1322 ; hsa-mir-8084 ; hsa-mir-1252-3p ; hsa-mir-3646 ; hsa-mir-607 ; hsa-mir-3161 ; hsa-mir-1299 ; hsa-mir-376a-2-5p ; hsa-mir-3935 ; hsa-mir-6128 ; hsa-mir-875-3p ; hsa-mir-4698 ; hsa-mir-8063 ; hsa-mir-7852-3p ; hsa-mir-3668 ; hsa-mir-7161-3p ; hsa-mir-3662 ; hsa-mir-613 ; hsa-mir-206 ; hsa-mir-1-3p ; hsa-mir-627-3p ; hsa-mir-4729 ; hsa-mir-3613-3p ; hsa-mir-577 ; hsa-mir-140-3p ; hsa-mir-5582-3p ; hsa-mir-548as-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-2681-5p ; hsa-mir-6868-3p ; hsa-mir-6883-3p ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-513a-5p ; hsa-mir-205-5p ; hsa-mir-454-5p

Nearest miRNA

hsa-mir-1225/Upstream/185577; hsa-mir-11401/Downstream/427318;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/5364, chr16-CpG: 71/Downstream/19753

Upstream sequence

GGAAGGTGAGCTGAATCAATCCATCTTCATATCCACTTCCTCCAATCTAAAGGAATAGCTGAAGGACGCAGCTAATGGATGAGCTTACCAGCAAAATACA

Downstream sequence

TTACATGAGAAATATGCTAATGTAGGCTAGAGGGGTAGGACTGTTAGGGGCAGGAGGGAAAAGGACAATTCACAGAACTAGTGGCTTTTTCAAAGGAAAC