Basic Information
VIS ID
TVIS30006875
Fusion event
HIV-NLRC5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q13
Reference genome
End
57040873/57006961 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-1225/Upstream/102608; hsa-mir-11401/Downstream/765328;
Nearby gene
NLRC5(No orient, 10113)
Upstream sequence
GAGACAGGGTCACAAAACCGTTAACACattattattattattattattattattattTCACATTATTTAGGGAAGTTTCATTTTTTTGTGAGCTATCACT
Downstream sequence
GATAATTTCTTATTTACTCATCATCTTGTATTTCTCTTCCTTGCACATTGGGGAAATGTCTATTCTAGTTTTTAATGTAAATGTTCTTGTGGCTTTTTTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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