Basic Information
VIS ID
TVIS30006880
Fusion event
HIV-chr16 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q21
Reference genome
GRCh37/hg19
Start
57374495/57340583 (Hg38)
End
57374495/57340583 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1225/Upstream/436230; hsa-mir-11401/Downstream/431706;
Nearest TSS
ENST00000527434/Upstream/55896; ENST00000219235/Downstream/18189;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/55531, chr16-CpG: 26/Downstream/41479
Nearby gene
CCL22(No orient, 18200)
Upstream sequence
cacgcctggctaatttttgtatctttagtagagatggggtttcaccatattggccaggctggtctcaaactcctgactttgtgatccgcctgcctcggcc
Downstream sequence
tcccaaagtgctgggattacaggtgtgagccaccatgcccagctcttgttcttcttcttctttttTTATTTTTTAACtttttatcttctagtaatttcaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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