Basic Information
VIS ID
TVIS30006883
Fusion event
HIV-chr16 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q21
Reference genome
GRCh37/hg19
Start
63901233/63867329 (Hg38)
End
63901233/63867329 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1225/Upstream/6094977; hsa-mir-11401/Downstream/3334992;
Nearest TSS
ENST00000527434/Upstream/137052; ENST00000568699/Downstream/68449;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/1830599, chr16-CpG: 19/Downstream/1083449
Nearby gene
CDH11(No orient, 1076424)
Nearest cancer related gene
CDH11(TSG, No orient, 1076424)
Upstream sequence
aatccatgtggttatggatcgtggttggaaatatctgtatgaagttatatttggattcatataactacatatgattatatagaaatatttatggatatgt
Downstream sequence
gcatacacagagtttagaatacaaacatatatgtccatgctctgatagctgagaggtatagatgcatcaatactacagtaacaatgagcatatctaacct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate