Basic Information
VIS ID
TVIS30006904
Fusion event
HIV-chr16 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
68645443/68611540 (Hg38)
End
68645443/68611540 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA16B
Nearest miRNA
hsa-mir-1225/Upstream/378041; hsa-mir-11401/Downstream/954268;
Nearest TSS
ENST00000527434/Upstream/20158; ENST00000565453/Downstream/24649;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/71703, chr16-CpG: 43/Downstream/31007
Nearby gene
CDH3(No orient, 33296)
Upstream sequence
aaggccgggcgcagtggctcaagcctgtaatcccagcactttgggaggcggaggcaggcggatcacctgaggtcaggagttcgagaccagcctgaccaat
Downstream sequence
atggagaaaccccatctctactaaaaacacaaaattagccgggcgcggtggtgcatgcctgtaatcccagctacttgggaagctgaggcaggagaatcgc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate