Basic Information
VIS ID
TVIS30006917
Fusion event
HIV-ST3GAL2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
70446294/70412391 (Hg38)
End
70446294/70412391 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA16B
Target gene
ST3GAL2
miRNAs that regulate target gene
hsa-mir-760 ; hsa-mir-615-3p ; hsa-mir-484 ; hsa-mir-324-3p ; hsa-mir-218-5p ; hsa-mir-4284 ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-4772-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-1304-3p ; hsa-mir-6741-3p ; hsa-mir-1281 ; hsa-mir-6890-3p ; hsa-mir-5698 ; hsa-mir-891a-3p ; hsa-mir-143-5p ; hsa-mir-504-3p ; hsa-mir-6499-3p ; hsa-mir-5193 ; hsa-mir-5693
Nearest miRNA
hsa-mir-1225/Upstream/381969; hsa-mir-11401/Downstream/6456545;
Nearest TSS
ENST00000527434/Upstream/11753; ENST00000573352/Downstream/10682;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/30429, chr16-CpG: 89/Downstream/26294
Upstream sequence
ttatttgtgatctaattgtcaattctttgaattctttcttacctccagtagtttttaactctcttggtctggtcaggtatggcagctcatgcctgtaatc
Downstream sequence
ccagcactttgggagaccacggtgggcaggttgcttgagcccaggagtttgagaccaacctgggcaacacgacaacaccctatctctacaaaaaatacaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate