VISDB Viral Integration Site DataBase

VIS ID

TVIS30006920

Fusion event

HIV-AP1G1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr16

Cytoband

q22.2

Reference genome

Start

End

71781552/71747649 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-186-5p ; hsa-mir-145-5p ; hsa-mir-101-3p ; hsa-mir-93-5p ; hsa-mir-652-3p ; hsa-mir-484 ; hsa-mir-106b-5p ; hsa-mir-379-3p ; hsa-mir-411-3p ; hsa-mir-20a-5p ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-513a-5p ; hsa-mir-3927-5p ; hsa-mir-7157-5p ; hsa-mir-4310 ; hsa-mir-7151-5p ; hsa-mir-2681-3p ; hsa-mir-96-3p ; hsa-mir-2681-5p ; hsa-mir-582-5p ; hsa-mir-486-3p ; hsa-mir-3945 ; hsa-mir-545-5p ; hsa-mir-3675-5p ; hsa-mir-576-3p ; hsa-mir-144-3p ; hsa-mir-3133 ; hsa-mir-622 ; hsa-mir-939-5p ; hsa-mir-1343-5p ; hsa-mir-920 ; hsa-mir-6726-5p ; hsa-mir-5591-5p ; hsa-mir-4300 ; hsa-mir-4487 ; hsa-mir-5681a ; hsa-mir-4744 ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-17-5p ; hsa-mir-3194-5p ; hsa-mir-421 ; hsa-mir-4709-5p ; hsa-mir-6849-3p ; hsa-mir-6858-3p

Nearest miRNA

hsa-mir-1225/Upstream/1717227; hsa-mir-11401/Downstream/5121287;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/23386, chr16-CpG: 91/Downstream/60371

Upstream sequence

ccagcctggcaacagagcaagattctgtcataaaataaaaTGAAATATAAAATACAAATAAACCAAAACCTTTATATGGGGAAGTAGATTCTCAACTTAA

Downstream sequence

AAAGAAAAAAAAAAGGTATTAGAAATCTCATTCTAAAAACGTAACTTTTAggccaggtggagtgggtcacatctgtaatccctgcactttgggaggtcag