Basic Information
VIS ID
TVIS30006925
Fusion event
HIV-chr16 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
75614038/75580140 (Hg38)
End
75614038/75580140 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1225/Upstream/5549718; hsa-mir-11401/Downstream/1288796;
Nearest TSS
ENST00000527434/Upstream/4532; ENST00000569234/Downstream/21863;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/13178, chr16-CpG: 47/Downstream/42867
Nearby gene
GABARAPL2(No orient, 2259)
Upstream sequence
GTTAGCACTTATTAAACACCCTCTGGATACCAGATGATTTACATACATTATCACAATCTTCAAAAAGCCCCCATAAGATAGGTAGTGAAGTTTCCACAGC
Downstream sequence
CACACGACTACCAAGTGGCAGAACTGAGATAATAAGTAAAACTGAAGAAGAATGATGTGGTTGGCAATGTCAAATCATTTCATGATTTTTTTTTTCTATT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate